| Index | Gene Name Primary | Protein Name | Uniprot ID | Gene Name Synonym | Ligand Name | Structure | PDB Code | ligand desolvation | Ligand Structure | Compound Affinity nM |
| 1 | MMP9 | Matrix metalloproteinase-9 | P14780 | CLG4B | 10b | Crystal structure of an MMP broad spectrum hydroxamate based inhibitor CC27 in complex with the MMP-9 catalytic domain | 4h3x | 92.01 | | no data |
| 2 | MMP9 | Matrix metalloproteinase-9 | P14780 | CLG4B | e40 | Crystal structure of a hydroxamate based inhibitor EN140 in complex with the MMP-9 catalytic domain | 4wzv | 87.09 | | 0.43 |
| 3 | MMP9 | Matrix metalloproteinase-9 | P14780 | CLG4B | b9z | Crystal structure of MMP9 in complex with inhibitor BE4. | 6esm | 82.13 | | no data |