| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | e11 | Human G9a-like (GLP, also known as EHMT1) in complex with inhibitor E11 | 3mo0 | 87.39 |
| 2 | 9hj | Structure of human GLP SET-domain (EHMT1) in complex with inhibitor 13 | 5vsd | 80.84 |
| 3 | jdg | GLP Methyltransferase with Inhibitor EML741- P3121 Crystal Form | 6mbp | 79.06 |
| 4 | 90p | Crystal structure of catalytic domain of GLP with MS0105 | 5v9j | 78.05 |
| 5 | 9hg | Structure of human GLP SET-domain (EHMT1) in complex with inhibitor 17 | 5vsf | 77.22 |
| 6 | 7l6 | Structure of human GLP SET-domain (EHMT1) in complex with inhibitor MS0124 | 5tuz | 76.62 |
| 7 | 7kz | Crystal structure of catalytic domain of GLP with MS012 | 5ttg | 73.6 |
| 8 | e67 | human G9a-like (GLP, also known as EHMT1) in complex with inhibitor E67 | 3mo2 | 71.63 |
| 9 | e72 | Human G9a-like (GLP, also known as EHMT1) in complex with inhibitor E72 | 3mo5 | 69.13 |
| 10 | q4a | G9a-like protein lysine methyltransferase inhibition by BIX-01294 | 3fpd | 64.06 |
| 11 | jdg | GLP Methyltransferase with Inhibitor EML741-P212121 Crystal Form | 6mbo | 33.79 |