| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | axa | Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor | 3dng | 92.01 |
| 2 | axb | Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor | 3dpe | 85.72 |
| 3 | axb | Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor | 3dpf | 85.71 |
| 4 | 2ni | Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor | 1zp5 | 80.7 |
| 5 | bsi | COMPLEX OF 2-(BIPHENYL-4-SULFONYL)-1,2,3,4-TETRAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID (D-TIC DERIVATIVE) WITH T CATALITIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM) | 1i76 | 76.9 |
| 6 | bsi | CRYSTAL STRUCTURE OF MMP8 COMPLEXED WITH HMR2909 | 1bzs | 76.55 |
| 7 | bbt | Crystal Structure of MMP8-Barbiturate Complex Reveals Mechanism for Collagen Substrate Recognition | 1jj9 | 70.46 |