The Ligandable Human Proteome

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Beta-secretase 1

Peptidase family A1 domain

IndexLigand NameStructurePDB codeligand desolvation
12liDesign and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents3ivi92.87
2f1jCrystal structure of the human BACE1 catalytic domain in complex with 4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid (2-mercapto-ethyl)-amide2zjj92.4
35haCrystal structure of BACE1 complexed with an inhibitor3tpp91.82
4c6rCrystal Structure of BACE1 in complex with N-(3-((4S,5R)-2-amino-4-methyl-5-phenyl-5,6-dihydro-4H-1,3-thiazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide6jse91.45
5djvBACE crystal structure with hydroxy pyrrolidine inhibitor6bfe91.43
6c7xCrystal Structure of BACE1 in complex with N-(3-((4S,5S)-2-amino-4-methyl-5-phenyl-5,6-dihydro-4H-1,3-thiazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide6jsf90.09
75haCrystal structure of human beta secretase complexed with inhibitor2b8l90.01
80xaBACE-1 in complex with HEA-type macrocyclic inhibitor, MV0785714gmi89.95
90guCrystal Structure of Human Beta Secretase in Complex with NVP-BVI1514d8589.86
1060wBACE-1 incomplex with (7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5hdu89.85
11djsBACE crystal structure with hydroxy pyrrolidine inhibitor6bfd89.73
12i03Crystal structure of human Beta-secretase complexed with inhibitor2is089.36
13s8zAminoimidazoles as BACE-1 Inhibitors. X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 234acx89.33
140n1BACE-1 in complex with HEA-macrocyclic inhibitor, MV0785124dpi89.28
15712Crystal Structure of Human Beta Secretase Complexed with inhibitor2ph689.26
16i02Crystal structure of human Beta-secretase complexed with inhibitor2irz89.09
17vg0Human BACE-1 in complex with N-((1S,2R)-1-benzyl-2-hydroxy-3-((1,1,5- trimethylhexyl)amino)propyl)-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl) benzamide2vie89.07
18vg5Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(ethylamino)-5-(2-oxo-1-pyrrolidinyl)benzamide2vj689.05
19vg4Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(2-oxo- 1-pyrrolidinyl)-5-(propyloxy)benzamide2viz89.01
20vg5Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(ethylamino)-5-(2-oxo-1-pyrrolidinyl)benzamide2xfj88.8
21qbhStructure based design, synthesis and SAR of cyclic hydroxyethylamine (HEA) BACE-1 inhibitors3qbh88.63
22vg7Human BACE-1 in complex with N-((1S,2R)-3-(cyclohexylamino)-2-hydroxy- 1-(phenylmethyl)propyl)-3-(ethylamino)-5-(2-oxo-1-pyrrolidinyl) benzamide2vj988.62
23508Discovery of Pyrrolidine-based b-Secretase Inhibitors: Lead Advancement through Conformational Design for Maintenance of Ligand Binding Efficiency3ufl88.61
24l01BACE (Beta Secretase) in complex with a nanomolar non-peptidic inhibitor1w5188.2
25g00Structure of BACE bound to SCH3465723kmx87.85
26vg6Human BACE-1 in complex with 3-(ethylamino)-N-((1S,2R)-2-hydroxy-1-(phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino)propyl)-5-(2-oxo-1-pyrrolidinyl)benzamide2vj787.76
27ayhHuman BACE-1 COMPLEX WITH AYH0113k5f87.71
28zy4Human BACE-1 in complex with 6-ethyl-1-methyl-N-((1S)-2-oxo-1-(phenylmethyl)-3-(tetrahydro-2H-pyran-4-ylamino)propyl)-1,3,4,6- tetrahydro(1,2)thiazepino(5,4,3-cd)indole-8-carboxamide 2,2-dioxide2wf487.57
2968lCrystal structure of BACE1 in complex with 2-aminooxazoline-3-azaxanthene inhibitor 25i3w87.53
30frpCrystal structure of beta-secretase complexed with an amino-ethylene inhibitor2fdp87.43
3166fBACE1 in complex with (R)-N-(3-(3-amino-2,5-dimethyl-1,1-dioxido-5,6-dihydro-2H-1,2,4-thiadiazin-5-yl)-4-fluorophenyl)-5-fluoropicolinamide5hu187.43
321r8Crystal structure of BACE1 in complex with hydroxyethylamine-macrocyclic inhibitor 134ke087.4
330gtCrystal Structure of Human Beta Secretase in Complex with NVP-BUR436, derived from a co-crystallization experiment4d8387.38
34sc6Structure of BACE Bound to SCH7459662qmg87.34
35zpxCrystal structure of BACE1 with its inhibitor3uqu87.18
363bnCrystal structure of human Beta-secretase complexed with L-L000430,4692b8v87.16
371qtHydroxyethylamine-based inhibitors of BACE1: P1-P3 macrocyclization can improve potency, selectivity, and cell activity4k8s87.03
383rsStructure of Bace-1 (Beta-Secretase) in complex with (R)-3-(2-amino-6-o-tolylquinolin-3-yl)-N-((R)-2,2-dimethyltetrahydro-2H-pyran-4-yl)-2-methylpropanamide3rsv86.97
391quBace-1 inhibitor complex4k9h86.85
40si5Crystal structure of BACE1 with a pyrazole-substituted tetrahydropyran thioamidine4xxs86.84
41qinCrystal Structure of Human Beta Secretase Complexed with inhibitor2oah86.82
420gtCrystal Structure of Human Beta Secretase in Complex with NVP-BUR436, derived from a soaking experiment3vg186.74
43rviStructure of Bace-1 (Beta-Secretase) in Complex with 2-((2-Amino-6-o-tolylquinolin-3-yl)methyl)-N-(cyclohexylmethyl)pentanamide3rvi86.73
44916Design and synthesis of potent hydroxyethylamine (hea) bace-1 inhibitors4exg86.72
4568mCrystal structure of BACE1 in complex with aminoquinoline compound 15i3v86.71
46996Design and synthesis of potent hydroxyethylamine (hea) bace-1 inhibitors4ewo86.65
47zy3Human BACE-1 in complex with 6-(ethylamino)-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-1-methyl-1, 3,4,5-tetrahydro-2,1-benzothiazepine-8-carboxamide 2,2-dioxide2wf386.58
48c6aDesign and synthesis of hydroxyethylamine (hea) BACE-1 inhibitors: prime side chromane-containing inhibitors3qi186.56
493p5Crystal Structure of Human Beta Secretase in Complex with BFG3563pi586.54
50842SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors4i0j86.52
51bxqCrystal Structure of Human Beta Secretase in Complex with NVP-BXQ4904d8886.52
520knStructure of Bace-1 (Beta-Secretase) in Complex with (2R)-N-((2S,3R)-1-(benzo[d][1,3]dioxol-5-yl)-3-hydroxy-4-((S)-6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridine]-4'-ylamino)butan-2-yl)-2-methoxypropanamide4dh686.48
531b7Design and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors4i0d86.44
544qaBACE1 in complex with 4-(cyclohexylamino)-1-(3-fluorophenyl)-8-(3-isopropoxybenzyl)-1,3,8-triazaspiro[4.5]dec-3-en-2-one4zpe86.42
5510wStructure of BACE Bound to 2-fluoro-5-(5-(2-imino-3-methyl-4-oxo-6-phenyloctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-2-yl)benzonitrile4h3j86.38
56rtnStructure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Amino-6-o-tolylquinolin-3-yl)-N-cyclohexylpropanamide3rtn86.37
57b35Discovery of aminoheterocycles as a novel beta-secretase inhibitor class3h0b86.37
58842BACE-1 in complex with ELN3808423n4l86.35
594qfBACE1 in complex with 8-benzyl-4-(cyclohexylamino)-1-(3-fluorophenyl)-7-methyl-1,3,8-triazaspiro[4.5]dec-3-en-2-one4zpg86.28
600vacrystal structure of beta-site app-cleaving enzyme 1 (bace-wt) complex with N-(N-(4-amino-3,5- dichlorobenzyl)carbamimidoyl)-3-(4-methoxyphenyl)-5- methyl-4-isothiazolecarboxamide4fse86.24
61bavCrystal structure of human beta-secretase in complex with NVP-BAV5443dv586.16
62qudhuman Bace (beta secretase) in complex with Cyclohexanecarboxylic acid (2-(2-am ino-6-phenoxy-4H-quinazolin-3-yl)-2 -cyclohexyl-ethyl)- amide2wjo86.05
6332dPreclinical characterization of AZD3839, a novel clinical candidate BACE1 inhibitor for the treatment of Alzheimer Disease4b0586
641beDesign and synthesis of thiophene dihydroisoquinolins as novel BACE-1 inhibitors4i1c85.9
651r6Crystal structure of BACE1 in complex with hydroxyethylamine-macrocyclic inhibitor 194ke185.67
66gmfLead Generation of BACE1 Inhibitors by Coupling Non-amidine New Warheads to a Known Binding Scaffold4b0q85.67
67f1mCrystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-chloro-2-isopropoxy-3-methoxy-benzyl)-piperidin-4-yl]-2-(4-sulfamoyl-phenoxy)-acetamide2zjm85.64
68l3jBACE1 in complex with a macrocyclic inhibitor6nv785.61
6909dCrystal Structure of BACE with Compound 123udp85.4
70zyeHuman BACE-1 in complex with 1-ethyl-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-4-(2-oxo-1- pyrrolidinyl)-1H-indole-6-carboxamide2wez85.31
718t3CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND4bfd85.27
7268jCrystal structure of BACE1 in complex with aminoquinoline inhibitor 65i3x85.18
730zaStructure-based design of novel dihydroisoquinoline BACE-1 inhibitors that do not engage the catalytic aspartates4hzt85.17
740gsCrystal Structure of Human Beta Secretase in Complex with NVP-BQQ7113vf385.16
75zy1Human BACE-1 in complex with 7-ethyl-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl(methyl)amino)-1-(phenylmethyl)propyl)-1-methyl-3,4- dihydro-1H-(1,2,5)thiadiazepino(3,4,5-hi)indole-9-carboxamide 2,2- dioxide2wf185.08
760mpStructure of Bace-1 (Beta-Secretase) in complex with N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide4dus85.08
77bjcHuman bace-1 complex with bjc0603k5g84.98
78qn7Aminoimidazoles as BACE-1 Inhibitors. X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 144acu84.92
791b1New Aminoimidazoles as BACE-1 Inhibitors: From Rational Design to Ab- lowering in Brain4b1c84.89
801liDesign and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents3ivh84.71
81zy2Human BACE-1 in complex with 8-ethyl-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-1-methyl-3,4,7, 8-tetrahydro-1H,6H-(1,2,5)thiadiazepino(5,4,3-de)quinoxaline-10- carboxamide 2,2-dioxide2wf284.47
820k9Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 374di284.45
830goCrystal Structure of Human Beta Secretase in Complex with NVP-AVI3263veu84.44
84aa9Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(ethylamino)-5-((methylsulfonyl)(phenyl)amino)benzamide2xfk84.41
85cs9Structure of BACE Bound to SCH7353102qmf84.32
86318Structure of BACE Bound to SCH7262223cid84.28
871ysCrystal Structure of Human Beta Secretase in Complex with Compound 11a4lxa84.15
883ysCrystal Structure of BACE with amino thiazine inhibitor LY28867214x7i83.89
891b9Design and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors4i0g83.89
90c6uCrystal Structure of BACE1 in complex with N-{3-[(4S)-2-amino-4-methyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-chloropyridine-2-carboxamide6jsg83.89
913loCrystal structure of BACE1 in complex with 2-aminooxazoline 4-fluoroxanthene inhibitor 494rcf83.85
9209eCrystal Structure of BACE with Compound 133udq83.8
930biHuman BACE-1 complex with NB-2163k5c83.77
9410oStructure of BACE Bound to 3-(5-((7aR)-2-imino-6-(6-methoxypyridin-2-yl)-3-methyl-4-oxooctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-3-yl)benzonitrile4h3f83.74
951w2Diethylaminosulfur Trifluoride-Mediated Intramolecular Cyclization of 2-hydroxy-benzylureas to Fused Bicyclic Aminooxazoline Compounds and Evaluation of Their Biochemical Activity Against Beta-Secretase-1 (BACE-1)4l7j83.73
96316Structure of BACE Bound to SCH7095833cic83.73
973utCrystal structure of BACE1 in complex with 2-aminooxazoline 3-aza-4-fluoro-xanthene inhibitor 224wtu83.58
98c83Crystal Structure of BACE1 in complex with N-{3-[(4R,5R,6R)-2-amino-5-fluoro-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide6jt383.52
9932pCrystal structure of human Beta secretase complexed with inhibitor1tqf83.45
100i6xDesign and Synthesis of BACE1 Inhibitors with In Vivo Brain Reduction of beta-Amyloid Peptides (COMPOUND (R)-41)4b0083.43
101vg3Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(pentylsulfonyl)benzamide2viy83.43
1021bfDesign and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors4i0f83.43
10310qStructure of BACE Bound to 2-((7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-2-imino-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-6(2H)-yl)nicotinonitrile4h3g83.41
104mr0Potent and selective isophthalamide S2 hydroxyethylamine inhibitor of BACE12p8383.36
1054qdBACE1 in complex with 8-(3-((1-aminopropan-2-yl)oxy)benzyl)-4-(cyclohexylamino)-1-(3-fluorophenyl)-1,3,8-triazaspiro[4.5]dec-3-en-2-one4zpf83.26
106zooBace1 in complex with the aminohydantoin Compound 1023ooz83.19
107957SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors4i0i83.17
108957BACE-1 in complex with ELN4759573nsh83.17
109b7eBACE1 compound 286ej283.16
110dkjBACE crystal structure with hydroxy pyrrolidine inhibitor6bfx83.07
111xfiHuman BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-((methylsulfonyl)(phenyl)amino)benzamide2xfi83.06
112l00Crystal structure of Human Bace-1 bound to inhibitor2ntr82.92
1131ytCrystal Structure of Human Beta Secretase in Complex with compound 11d4lxk82.87
114f1lCrystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-bromo-2,3-dimethoxy-benzyl)-piperidin-4-yl]-4-mercapto-butyramide2zjl82.77
115bxdCrystal Structure of Human Beta Secretase in Complex with NVP-BXD552, derived from a soaking experiment4d8982.64
1160vbCrystal structure of beta-site app-cleaving enzyme 1 (BACE-DB-MUT) complex with N-(N-(4- acetamido-3-chloro-5-methylbenzyl)carbamimidoyl)-3-(4- methoxyphenyl)-5-methyl-4-isothiazolecarboxamide4fsl82.64
117d9wCrystal Structure of Human BACE-1 in Complex with amino-1,4-oxazine compound 46fgy82.63
118cs5Structure of BACE1 bound to SCH6264852qk582.48
119dk7BACE crystal structure with hydroxy morpholine inhibitor6bfw82.45
1201blSPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors.4i0h82.08
1211yuCrystal Structure of Human Beta Secretase in Complex with compound 12a4lxm82.07
122cs5Structure of BACE Bound to SCH5894323l5882.04
1231hqCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((S)-2-amino-4-difluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1781.98
1241h6CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4R,5S)-2-amino-5-fluoro-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j0y81.97
1253mrStructure of BACE complexed to compound 3a2q1581.97
12652k1,4-Oxazine BACE1 inhibitors5clm81.71
1277h3CRYSTAL STRUCTURE OF BETA-SITE APP-CLEAVING ENZYME 1 COMPLEXED WITH N-(3-((4AS,7AS)-2-AMINO-4,4A,5,6-TETRAHYDRO-7AH-FURO[2,3-D][1,3]THIAZIN-7A-YL)-4-FLUOROPHENYL)-5-BROMO-2-PYRIDINECARBOXAMIDE5tol81.67
12860tBACE-1 in complex with (4aR,7aS)-7a-(2,6-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5he481.63
1293lnCrystal structure of BACE1 in complex with aminooxazoline xanthene inhibitor 24rce81.62
13060xBACE-1 in complex with (4aR,7aS)-7a-(2,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one5he781.59
131bxdCrystal Structure of Human Beta Secretase in Complex with NVP-BXD552, derived from a co-crystallization experiment4d8c81.52
13210jStructure of BACE-1 Bound to (7aR)-6-benzoyl-7a-(4-(3-cyanophenyl)thiophen-2-yl)-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-2(3H)-iminium4h1e81.51
133012Crystal structure of BACE-1 in complex with inhibitor3ckp81.5
1343ktBACE-1 in complex with (R)-4-(2-cyclohexylethyl)-4-(((1S,3R)-3-(cyclopentylamino)cyclohexyl)methyl)-1-methyl-5-oxoimidazolidin-2-iminium4r9181.45
1356bsCrystal structure of BACE1 in complex with 3-(2-amino-6-(o-tolyl)quinolin-3-yl)-N-(3,3-dimethylbutyl)propanamide5ie181.4
1361w1Diethylaminosulfur Trifluoride-Mediated Intramolecular Cyclization of 2-hydroxy-benzylureas to Fused Bicyclic Aminooxazoline Compounds and Evaluation of Their Biochemical Activity Against Beta-Secretase-1 (BACE-1)4l7h81.32
1373ruStructure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Aminoquinolin-3-yl)-N-(cyclohexylmethyl)propanamide3ru181.3
138625Bace-1 with the aminopyridine Compound 323l3a81.22
139ej7Structure of Bace-1 (Beta-Secretase) in complex with : N-(3-((1R,5S,6R)-3-amino-5-methyl-2-oxa-4-azabicyclo[4.1.0]hept-3-en-5-yl)-4-fluorophenyl)-5-methoxypyrazine-2-carboxamide6c2i81.19
1400b5Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide5ygx81.16
141vtiCrystal structure of BACE1 with its inhibitor4ivt81.12
1421h8CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((S)-2-amino-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j0p81.08
143p6jco-crystal structure of BACE with inhibitor AM-64946pz481.05
144b7tBACE1 compound 236ej381.05
1454rxBACE crystal structure with tricyclic aminothiazine inhibitor4zsq81.01
1466t9CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Ethoxy-pyridine-2-carboxylic acid [3-((R)-2-amino-5,5-difluoro-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j0t80.95
1471hoCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((S)-2-amino-5,5-difluoro-4-fluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1c80.88
148siiCrystal Structure of Human Beta Secretase Complexed with Spiropiperdine Iminohydantoin Inhibitor3fkt80.87
149532Pyrazolyl and Thienyl Aminohydantoins as Potent BACE1 Inhibitors3s7m80.86
15066hBACE1 in complex with 4-(3-(furan-2-carboxamido)phenyl)-1-methyl-5-oxo-4-phenylimidazolidin-2-iminium5hu080.83
1511h7CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4R,5R)-2-amino-5-fluoro-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j0v80.83
152wzvCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND3zov80.83
15374bAminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality5t1w80.8
1543hfCrystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with bms-655295 aka n~3~-((1s,2r)-1- benzyl-2-hydroxy-3-((3-methoxybenzyl)amino)propyl)-n~1~, n~1~-dibutyl-1h-indole-1,3-dicarboxamide3ohf80.77
155dwdCrystal structure of BACE1 in complex with aminooxazoline xanthene 11a4frk80.72
1561h5CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4S,5R)-2-amino-5-fluoro-4-fluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j0z80.68
157310X-ray structure of Bace-1 in complex with compound 3.b.102zdz80.59
158d8yStructure of BACE bound to SCH124723kmy80.2
1591bsStructure-based design of novel dihydroisoquinoline BACE-1 inhibitors that do not engage the catalytic aspartates4i1080.15
160bdxStructure of BACE Bound to SCH7362013l5f80.15
161569Bace1 with the aminohydantoin Compound R-583inh80.14
1623koBACE-1 in complex with (R)-4-(2-cyclohexylethyl)-4-(((R)-1-(2-cyclopentylacetyl)pyrrolidin-3-yl)methyl)-1-methyl-5-oxoimidazolidin-2-iminium4r8y79.96
163hrvStructure of Bace-1 in complex with Ligand 86e3z79.83
16418pRational Design and Synthesis of Aminopiperazinones as Beta Secretase (BACE) Inhibitors3u6a79.83
165pb7Crystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with (2S)-2-((3S)-3-(acetylamino)-3-(butan-2-yl)-2-oxopyrrolidin-1-yl)-N-((2S,3R)-3-hydroxy-4-((3-methoxybenzyl)amino)-1-phenylbutan-2-yl)-4-phenylbutanamide3skf79.74
1665t8CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-[3-[(3-chloro-8-quinolyl)amino]phenyl]-5-methyl-2,6-dihydro-1,4-oxazin-3-amine5f0079.57
1674rzBACE crystal structure with bicyclic aminothiazine inhibitor4zsp79.5
1681bcDesign and synthesis of thiophene dihydroisoquinolins as novel BACE-1 inhibitors4i1279.45
1690kqStructure of BACE Bound to 5-(3-(5-chloropyridin-3-yl)phenyl)-5-cyclopropyl-2-imino-3-methylimidazolidin-4-one4djx79.44
170462BACE1 with Compound 22qu379.42
1715t7CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH (1SR,2SR)-2-((R)-2-amino-5,5-difluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-N-(3-chloroquinolin-8-yl)cyclopropanecarboxamide5f0179.41
1720krStructure of BACE Bound to (R)-5-cyclopropyl-2-imino-3-methyl-5-(3-(5-(prop-1-yn-1-yl)pyridin-3-yl)phenyl)imidazolidin-4-one4djy79.38
1730uqCrystal Structure of BACE with Compound 12a4fm879.3
174sc7Structure of BACE Bound to SCH7347232qp879.23
1754ryBACE crystal structure with tricyclic aminothiazine inhibitor4zsr79.17
176xx4Structure of BACE complexed to compound 12q1179.09
1773voCrystal structure of human BACE-1 bound to Compound 24B4wy179.08
17860yBACE-1 in complex with (7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-6-(5-fluoropyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5hd079.07
1791hlCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4S,6S)-2-amino-4-methyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1f79.05
18060sBACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5he578.98
181472Bace1 with Compound 303in378.87
182879Bace1 in complex with the aminopyridine Compound 443l3878.72
183c27X-ray crystal structure of beta secretase complexed with compound 272va778.71
184buhCrystal Structure of Human BACE-1 in Complex with CNP5206eqm78.65
1853vpCrystal structure of human BACE-1 bound to Compound 364wy678.65
1861hmCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4S,6S)-2-amino-4-fluoromethyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1e78.62
1870upCrystal Structure of BACE with Compound 14g4fm778.59
1881b8Design and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors4i0e78.57
189954BACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methyl-6-(methylthio)pyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5hdz78.57
190591Pyrazolyl and Thienyl Aminohydantoins as Potent BACE1 Inhibitors3s7l78.53
191pb0Crystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with BMS-693391 AKA (2S)-2-((3R)-3-acetamido-3-isobutyl-2-oxo-1-pyrrolidinyl)-N-((1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-2-((2R,4R)-4-propoxy-2-pyrrolidinyl)ethyl)-4-phenylbutanamide3r2f78.42
1923wpCrystal structure of human BACE-1 bound to Compound 64x2l78.42
193b02Crystal structure of beta secetase in complex with 2-amino-3-methyl-6-((1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl)pyrimidin-4(3H)-one3vv878.31
194f1nCrystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-chloro-2-isopropoxy-3-methoxy-benzyl)-piperidin-4-yl]-2-(2-methyl-4-sulfamoyl-phenoxy)-acetamide2zjn78.11
195411X-ray structure of Bace-1 in complex with compound 6g2ze178.09
196kggAminoimidazoles as BACE-1 Inhibitors: From De Novo Design to Ab- lowering in Brain4b7878.03
197bdwStructure of BACE Bound to SCH7360623l5e77.87
198p6uAminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality5t1u77.79
199m7dStructure of BACE-1 in complex with Ligand 136od677.73
2000kpStructure of BACE Bound to 2-imino-3-methyl-5-phenyl-5-(3-(pyridin-3-yl)phenyl)imidazolidin-4-one4djw77.52
201009Crystal structure of BACE-1 in complex with inhibitor3ckr77.52
2021hhCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4R,5R,6R)-2-amino-5-fluoro-4-methyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1i77.46
2033j98-Tetrahydropyran-2-yl chromans: highly selective beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors4r5n77.33
2043toStructure of BACE bound to SCH7082363kn077.3
205593Bace1 with the aminohydantoin Compound 293ind77.23
2060b6Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide5ygy77.21
2071hgCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4R,5R,6S)-2-amino-5-fluoro-4-methyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1k77.14
2085haCrystal structure of BACE1 complexed with an inhibitor3tpr76.96
2092exDiscovery of 7-THP chromans: BACE1 inhibitors that reduce A-beta in the CNS4n0076.75
2101bbStructure-based design of novel dihydroisoquinoline BACE-1 inhibitors that do not engage the catalytic aspartates4i0z76.64
2111m7Spirocyclic Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors4jpe76.63
212pb8Crystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with (2S)-2-((3R)-3-acetamido-3-isobutyl-2-oxo-1-pyrrolidinyl)-N-((1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-2-(1,2,3,4-tetrahydro-3-isoquinolinyl)ethyl)-4-phenylbutanamide3skg76.54
2131hjCRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4S,6R)-2-amino-4-methyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide4j1h76.51
2141wpAminooxazoline inhibitor of BACE-14lc776.44
2150b1Crystal Structure of beta secetase in complex with 2-amino-6-((1S,2R)-2-(3'-methoxybiphenyl-3-yl)cyclopropyl)-3-methylpyrimidin-4(3H)-one3vv776.31
216x45Bace1 with the aminohydantoin Compound 373inf76.27
2176t6New Aminoimidazoles as BACE-1 Inhibitors: From Rational Design to Ab- lowering in Brain4b1e76.26
2183kuBACE-1 in complex with (R)-4-(2-cyclohexylethyl)-4-(((1S,3R)-3-(isonicotinamido)cyclohexyl)methyl)-1-methyl-5-oxoimidazolidin-2-iminium4r9276.13
2193uy8-Tetrahydropyran-2-yl chromans: highly selective beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors4rrs76.01
2209ipX-ray crystal structure of beta secretase complexed with compound 6b2ohs76
22160uBACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(4-ethoxy-5-fluoro-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5hdx75.94
222iiiBACE-1 IN COMPLEX WITH LIGAND 323977785mxd75.77
223f1iCrystal structure of the human BACE1 catalytic domain in complex with N-[1-(2,6-dimethoxy-benzyl)-piperidin-4-yl]-4-mercapto-butyramide2zji75.76
224f1kCrystal structure of the human BACE1 catalytic domain in complex with 4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid(3-mercapto-propyl)-amide2zjk75.57
225x17Bace1 with the aminohydantoin Compound S-343ine75.54
2263ux8-Tetrahydropyran-2-yl chromans: highly selective beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors4rro75.39
2273uw8-Tetrahydropyran-2-yl chromans: highly selective beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors4rrn75.35
228251BACE1 with Compound 12qu275.09
2295qvCompound 185enk75.02
2300b4Crystal Structure of beta secetase in complex with (6S)-2-amino-3,6-dimethyl-6-[(1R,2R)-2-phenylcyclopropyl]-3,4,5,6-tetrahydropyrimidin-4-one3wb574.9
231f1hCrystal structure of the human BACE1 catalytic domain in complex with N-(1-benzyl-piperidin-4-yl)-4-mercapto-butyramide2zjh74.83
232z81Bace1 in complex with the aminohydantoin Compound 4g3lhg74.51
233c7oCrystal Structure of BACE1 in complex with N-{3-[(5R)-3-amino-5-methyl-9,9-dioxo-2,9lambda6-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide6jsn74.4
234b00Crystal Structure of beta secetase in complex with 2-amino-3-methyl-6-((1S, 2R)-2-phenylcyclopropyl)pyrimidin-4(3H)-one3vv674.25
2351chStructure-based design of novel dihydroisoquinoline BACE-1 inhibitors that do not engage the catalytic aspartates.4i1174.19
236aedBACE-1 complexed with compound 43buh73.98
2370kkStructure of BACE Bound to 2-imino-3-methyl-5,5-diphenylimidazolidin-4-one4dju73.77
238cmzX-ray crystal structure of beta secretase complexed with compound 52of073.76
23960vBACE-1 incomplex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium5hdv73.65
240779BACE-1 in complex with (R)-4-(2-cyclohexylethyl)-1-methyl-5-oxo-4-(((1S,3R)-3-(3-phenylureido)cyclohexyl)methyl)imidazolidin-2-iminium4r9373.35
2413kwBACE-1 in complex with 2-(((1R,3S)-3-(((R)-4-(2-cyclohexylethyl)-2-iminio-1-methyl-5-oxoimidazolidin-4-yl)methyl)cyclohexyl)amino)quinolin-1-ium4r9573.35
242bx2Bace1 with Compound 383in473.28
2435quCompound 105enm73.17
2448ipX-ray crystal structure of beta secretase complexed with compound 6a2ohr72.92
2456we(4~{S},6~{S})-4-[2,4-bis(fluoranyl)phenyl]-6-(3,5-dimethyl-1,2-oxazol-4-yl)-4-methyl-5,6-dihydro-1,3-thiazin-2-amine (compound 5) bound to BACE15kr872.75
246c8cX-ray crystal structure of beta secretase complexed with compound 8c2va572.49
2470b3Crystal Structure of beta secetase in complex with 2-amino-3,6-dimethyl-6-(2-phenylethyl)-3,4,5,6-tetrahydropyrimidin-4-one3wb472.29
24810vStructure of BACE Bound to 3-(5-((7aR)-2-imino-6-(3-methoxypyridin-2-yl)-3-methyl-4-oxooctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-3-yl)benzonitrile4h3i72.12
249ev6Fragment based discovery and optimisation of bace-1 inhibitors3s2o71.54
25074aStructure of BACE bound to SCH7438133lnk71.47
251vsiCrystal structure of BACE1 with its inhibitor4ivs70.5
2526wd(4~{S},6~{S})-4-[2,4-bis(fluoranyl)phenyl]-4-methyl-6-pyrimidin-5-yl-5,6-dihydro-1,3-thiazin-2-amine (compound 12) bound to BACE15kqf70.05
253bdjStructure of BACE Bound to SCH7104133l5970.04
254454Bace-1 with Compound 33igb69.65
255ev4Fragment Based Discovery and Optimisation of BACE-1 Inhibitors3msk69.34
256ev5Fragment Based Discovery and Optimisation of BACE-1 Inhibitors3msl68.83
257rtmStructure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Aminoquinolin-3-yl)-N-cyclohexyl-N-methylpropanamide3rtm68
258bdoStructure of BACE Bound to SCH7136013l5b62.04
259bdvStructure of BACE Bound to SCH7238733l5d61.47
260bdqStructure of BACE Bound to SCH7238713l5c55.16