| Index | Ligand Name | Structure | PDB code | Compound Potency nM |
| 1 | 5wc | COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND 5 | 5fck | 6 |
| 2 | 8nq | Complement factor D | 5nb7 | 6 |
| 3 | 8rz | Complement factor D in complex with the inhibitor (1R,3S,5R)-2-Aza-bicyclo[3.1.0]hexane-2,3-dicarboxylic acid 2-[(1-carbamoyl-1H-indol-3-yl)-amide] 3-[(3-trifluoromethoxy-phenyl)-amide] | 5naw | 50 |
| 4 | 8s5 | Complement factor D in complex with the inhibitor (2S,4R)-4-Fluoro-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide] | 5nba | 50 |
| 5 | 8s2 | Complement factor D in complex with the inhibitor (2S,4S)-4-Amino-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide] | 5nb6 | 500 |
| 6 | 8rw | Complement factor D in complex with the inhibitor (S)-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide] | 5nar | 500 |
| 7 | 5w5 | COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND2 | 5fbe | 1.4e+004 |
| 8 | qjs | COMPLEMENT FACTOR D IN COMPLEX WITH A REVERSIBLE INDOLE CARBOXYLIC ACID BASED INHIBITOR | 5mt0 | 5e+005 |
| 9 | m7o | COMPLEMENT FACTOR D IN COMPLEX WITH A REVERSIBLE BENZOIC ACID BASED INHIBITOR | 5mt4 | 5e+005 |