| Index | Ligand Name | Ligand Structure | Gene Name Primary | Protein Name | Uniprot ID | Gene Name Synonym | PDB Codes |
| 1 | iu1 | | UBP14 | Ubiquitin carboxyl-terminal hydrolase 14 | P54578 | TGT | 6iik |
| 2 | a8o | | UBP14 | Ubiquitin carboxyl-terminal hydrolase 14 | P54578 | TGT | 6iin |
| 3 | a8l | | UBP14 | Ubiquitin carboxyl-terminal hydrolase 14 | P54578 | TGT | 6iim |
| 4 | a8f | | UBP14 | Ubiquitin carboxyl-terminal hydrolase 14 | P54578 | TGT | 6iil |
| 5 | mix | | UBP15 | Ubiquitin carboxyl-terminal hydrolase 15 | Q9Y4E8 | KIAA0529 | 6gh9 |
| 6 | 9qd | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5vs6 |
| 7 | 8wn | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5ngf |
| 8 | 8wk | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5nge |
| 9 | 8qq | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5n9t |
| 10 | 8rn | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5n9r |
| 11 | cq5 | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 6f5h |
| 12 | ajj | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5whc |
| 13 | 9qa | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5vsb |
| 14 | 8jp | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5uqx |
| 15 | 8jm | | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 | Q93009 | HAUSP | 5uqv |