| Index | Ligand Name | Ligand Structure | Gene Name Primary | Protein Name | Uniprot ID | Gene Name Synonym | PDB Codes |
| 1 | yin | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 3jzk |
| 2 | y30 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4mdn |
| 3 | mi6 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 3lbl |
| 4 | hu8 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 6q9o |
| 5 | h28 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 6i3s |
| 6 | diz | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 1t4e |
| 7 | 9qw | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 5oc8 |
| 8 | 7hc | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 5trf |
| 9 | 6zt | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 5ln2 |
| 10 | 6ss | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 5lay |
| 11 | 4th | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4zyi |
| 12 | 35s | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4qo4 |
| 13 | 2u7 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4ogv |
| 14 | 2tz | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4occ |
| 15 | 2tw | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4oba |
| 16 | 2sw | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4oas |
| 17 | 1mt | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4jvr |
| 18 | 1mq | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4jve |
| 19 | 1mo | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4jv9 |
| 20 | 1mn | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4jv7 |
| 21 | 0r2 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4ere |
| 22 | tj2 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 3tj2 |
| 23 | 0y7 | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4hbm |
| 24 | 1my | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 4jwr |
| 25 | 6sk | | MDM2 | E3 ubiquitin-protein ligase Mdm2 | Q00987 | | 5lav |