| Index | Gene Name Primary | Uniprot ID | Protein Name | Gene Name Synonym | PDB codes |
| 1 | MMP1 | P03956 | Interstitial collagenase | CLG | 1cge 1cgf 1cgl 1hfc 1su3 2clt 2j0t 2tcl 3shi 4auo 966c |
| 2 | MMP10 | P09238 | Stromelysin-2 | STMY2 | 1q3a 3v96 4ilw |
| 3 | MMP12 | P39900 | Macrophage metalloelastase | HME | 1jiz 1jk3 1os2 1os9 1rmz 1ros 1utt 1utz 1y93 2hu6 2oxu 2oxw 2oxz 2w0d 2wo8 2wo9 2woa 3ba0 3ehx 3ehy 3f15 3f16 3f17 3f18 3f19 3f1a 3lik 3lil 3lir 3ljg 3lk8 3lka 3n2u 3n2v 3nx7 3rts 3rtt 3ts4 3tsk 3uvc 4efs 4gql 4gr0 4gr3 4gr8 4guy 4h30 4h49 4h76 4h84 4i03 4ijo 5cxa 5czm 5d2b 5d3c 5i0l 5i2z 5i3m 5i43 5i4o 5l79 5l7f 5lab 5n5j 5n5k 6ekn 6ela 6enm 6eox |
| 4 | MMP13 | P45452 | Collagenase 3 | | 1xuc 1xud 1xur 1you 1ztq 2d1n 2e2d 2ow9 2ozr 2pjt 2yig 3elm 3i7g 3i7i 3kec 3kej 3kek 3kry 3ljz 3o2x 3tvc 3wv1 3wv2 3wv3 3zxh 456c 4a7b 4fu4 4fvl 4g0d 4jp4 4jpa 4l19 5b5o 5b5p 5bot 5boy 5bpa 5uwk 5uwl 5uwm 6hv2 830c 1cxv |
| 5 | MMP14 | P50281 | Matrix metalloproteinase-14 | | 1bqq 1buv 3ma2 5h0u |
| 6 | MMP16 | P51512 | Matrix metalloproteinase-16 | C8orf57 MMPX2 | 1rm8 |
| 7 | MMP2 | P08253 | 72 kDa type IV collagenase | CLG4A | 1ck7 1eak 1qib 3ayu |
| 8 | MMP3 | P08254 | Stromelysin-1 | STMY1 | 1b3d 1b8y 1biw 1bqo 1c3i 1c8t 1caq 1ciz 1cqr 1d5j 1d7x 1d8f 1d8m 1g05 1g49 1g4k 1hfs 1hy7 1qia 1qic 1slm 1sln 1uea 1usn 2d1o 2usn 3ohl 3oho 4dpe 4g9l 4ja1 6mav 6n9d |
| 9 | MMP7 | P09237 | Matrilysin | MPSL1 PUMP1 | 1mmp 1mmq 1mmr 2y6c 2y6d |
| 10 | MMP8 | P22894 | Neutrophil collagenase | CLG1 | 1a85 1a86 1bzs 1i73 1i76 1jao 1jap 1jaq 1jh1 1jj9 1kbc 1mmb 1mnc 1zp5 1zs0 1zvx 2oy2 2oy4 3dng 3dpe 3dpf 3tt4 4qkz 5h8x 1jan |
| 11 | MMP9 | P14780 | Matrix metalloproteinase-9 | CLG4B | 1gkc 1gkd 1l6j 2ovx 2ovz 2ow0 2ow1 2ow2 4h1q 4h2e 4h3x 4h82 4hma 4jij 4jqg 4wzv 4xct 5cuh 5i12 5th6 5th9 5ue3 5ue4 6esm |