| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 8hn | Crystal structure of the BCL6 BTB domain in complex with pyrazolo-pyrimidine ligand | 5n21 | 63.65 |
| 2 | egp | Crystal structure of BCL6 BTB domain with compound 15f | 6c3l | 57.11 |
| 3 | u52 | CRYSTAL STRUCTURE OF BCL-6 BTB-domain with BI-3802 | 5mw2 | 48.3 |
| 4 | c0h | Crystal structure of the BCL6 BTB domain in complex with anilinopyrimidine ligand | 6ew6 | 43.89 |
| 5 | tj3 | Crystal structure of the BCL6 BTB-domain with compound 2 | 5mwd | 42.48 |
| 6 | 8gn | Crystal structure of the BCL6 BTB domain in complex with pyrazolo-pyrimidine ligand | 5n20 | 33.95 |