| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | q7m | Human EphA3 Kinase domain in complex with quinoxaline derivatives | 4p5z | 89.93 |
| 2 | b96 | Human EphA3 Kinase domain in complex with Birb796 | 4twn | 89.92 |
| 3 | l87 | Human EphA3 Kinase domain in complex with ligand 87 | 4gk3 | 87.47 |
| 4 | l66 | Human EphA3 Kinase domain in complex with ligand 66 | 4gk2 | 86.58 |
| 5 | l90 | Human EphA3 Kinase domain in complex with ligand 90 | 4gk4 | 85.63 |
| 6 | c07 | Human EphA3 kinase domain in complex with compound 7 | 4g2f | 85.07 |
| 7 | 37w | Human EphA3 Kinase domain in complex with compound 164 | 4two | 78.73 |
| 8 | q0b | Human EphA3 Kinase domain in complex with quinoxaline derivatives | 4p5q | 76.34 |