| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 47w | Structure of MELK in complex with inhibitors | 4umt | 92.41 |
| 2 | 6pv | MELK in complex with NVS-MELK5 | 5k00 | 87.03 |
| 3 | 3i7 | Structure of MELK in complex with inhibitors | 4d2t | 85.83 |
| 4 | 7my | Structure of Maternal Embryonic Leucine Zipper Kinase | 5tx3 | 84.82 |
| 5 | h91 | Structure of Maternal Embryonic Leucine Zipper Kinase | 5twl | 83.6 |
| 6 | b5s | Structure of MELK in complex with inhibitors | 4umq | 83.51 |
| 7 | 6bb | MELK in complex with NVS-MELK12B | 5ihc | 80.24 |
| 8 | 7kd | Crystal structure of MELK in complex with an inhibitor | 5mah | 79.79 |
| 9 | 7lv | Structure of Maternal Embryonic Leucine Zipper Kinase | 5tvt | 79.26 |
| 10 | 82b | Crystal structure of unphosphorylated Maternal Embryonic Leucine zipper Kinase (MELK) in complex with pyrrolopyrazole inhibitor | 4bky | 78.11 |
| 11 | 5u5 | Crystal structure of MELK in complex with an inhibitor | 5mai | 76.37 |
| 12 | 1ws | Crystal structure of unphosphorylated Maternal Embryonic Leucine zipper Kinase (MELK) in complex with a benzodipyrazole inhibitor | 4bkz | 75.99 |
| 13 | qbb | Structure of MELK in complex with inhibitors | 4umr | 74.94 |
| 14 | 7kc | Crystal structure of MELK in complex with an inhibitor | 5mag | 74.08 |
| 15 | xin | Crystal structure of MELK in complex with an inhibitor | 5maf | 70.47 |
| 16 | tak | Crystal structure of Maternal Embryonic Leucine Zipper Kinase (MELK) in complex with dorsomorphin (Compound C) | 6gvx | 70.35 |
| 17 | 6bf | MELK in complex with NVS-MELK8A | 5ih9 | 69.84 |
| 18 | 6be | MELK in complex with NVS-MELK8F | 5iha | 69.61 |
| 19 | 7ly | Structure of Maternal Embryonic Leucine Zipper Kinase | 5twy | 68.69 |