| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | p47 | Crystal structure of Human PDK1 kinase domain in complex with an allosteric activator bound to the PIF-pocket | 3hrf | 81.57 |
| 2 | a06 | Human PDK1 Kinase Domain in Complex with Allosteric Activator PS114 Bound to the PIF-Pocket | 4a06 | 79.6 |
| 3 | mjf | Human PDK1 Kinase Domain in Complex with Allosteric Compound PS182 Bound to the PIF-Pocket | 4aw0 | 78.93 |
| 4 | rf4 | Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RF4 | 4xx9 | 76.5 |
| 5 | 78w | Human PDK1 Kinase Domain in Complex with Allosteric Compound PSE10 Bound to the PIF-Pocket | 5lvo | 74.44 |
| 6 | j30 | PDK1 mutant bound to allosteric disulfide fragment activator JS30 | 3otu | 66.25 |
| 7 | svq | Human PDK1 Kinase Domain in Complex with Allosteric Compound 7 Bound to the PIF-Pocket | 5ack | 65.21 |