| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | apa | HUMAN BETA-TRYPTASE: A RING-LIKE TETRAMER WITH ACTIVE SITES FACING A CENTRAL PORE | 1a0l | 87.15 |
| 2 | c3a | human beta tryptase II complexed with activated ketone inhibitor CRA-29382 | 2fxr | 74.37 |
| 3 | c3a | Human beta-tryptase II with inhibitor CRA-29382 | 2fs8 | 73.09 |
| 4 | c4a | Human beta tryptase II with inhibitor CRA-28427 | 2fs9 | 72.82 |
| 5 | 5ta | TRYPTASE B2 IN COMPLEX WITH 5-(3-Aminomethyl-phenoxymethyl)-3-[3-(2-chloro-pyridin-3-ylethynyl)-phenyl]-oxazolidin-2-one; compound with trifluoro-acetic acid | 5f03 | 71.01 |
| 6 | 5am | Human beta II tryptase with inhibitor CRA-27592 | 2gdd | 69.27 |