| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | kw5 | Crystal structure of human ATAD2 bromodomain in complex with N-(4-bromo-3-((3-methylpiperidin-1-yl)sulfonyl)phenyl)-2-(2,5-dioxoimidazolidin-1-yl)acetamide | 6s55 | 84.76 |
| 2 | g7h | The ATAD2 bromodomain in complex with compound 15 | 6hic | 80.12 |
| 3 | kvt | Crystal structure of human ATAD2 bromodomain in complex withN-(3-(azepan-1-ylsulfonyl)-4-methylphenyl)-2-(4,4-dimethyl-2,5-dioxoimidazolidin-1-yl)acetamide | 6s57 | 75.61 |
| 4 | yej | Crystal structure of human ATAD2 bromodomain in complex with 4-(3R,4R) -4-(3-methyl-2-oxo-1,2-dihydro-1,7-naphthyridin-8-yl)aminopiperidin-3- yloxymethyl)-1-thiane-1,1-dione | 5a82 | 71.76 |
| 5 | 38t | Structure of the bromodomain of human ATPase family AAA domain-containing protein 2 (ATAD2) in complex with 5-methyl uridine | 4qsw | 71.15 |
| 6 | g5w | The ATAD2 bromodomain in complex with compound 7 | 6hi4 | 69.47 |
| 7 | thm | Structure of the bromodomain of human ATPase family AAA domain-containing protein 2 (ATAD2) in complex with thymidine | 4qsv | 68.32 |
| 8 | g7n | The ATAD2 bromodomain in complex with compound 13 | 6hia | 67.91 |
| 9 | g6w | The ATAD2 bromodomain in complex with compound 11 | 6hi8 | 67.85 |
| 10 | 78j | Crystal structure of human ATAD2 bromodomain in complex with 8-(3R,4R) -3-(cyclohexylmethoxy)piperidin-4-yl-amino-3-methyl-1,2-dihydro-1,7- naphthyridin-2-one | 5a81 | 67.63 |
| 11 | bqh | The ATAD2 bromodomain in complex with compound 2 | 6epu | 67.48 |
| 12 | boh | The ATAD2 bromodomain in complex with compound 6 | 6epj | 67.25 |
| 13 | bqt | The ATAD2 bromodomain in complex with compound 5 | 6epv | 66.43 |
| 14 | bqe | The ATAD2 bromodomain in complex with compound UZH-DS15 | 6epr | 66.17 |
| 15 | g1e | The ATAD2 bromodomain in complex with compound 12 | 6ept | 65.44 |
| 16 | 6xx | Crystal structure of human ATAD2 bromodomain in complex with 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one | 5lj0 | 65.25 |
| 17 | g5z | The ATAD2 bromodomain in complex with compound 9 | 6hi6 | 65.23 |
| 18 | fzb | Crystal structure of human ATAD2 bromodomain in complex with 3-methyl-8-((8-methyl-8-azabicyclooctan-3-yl)amino)-1,7-naphthyridin-2(1H)-one | 6hdn | 65.06 |
| 19 | yd3 | Crystal structure of human ATAD2 bromodomain in complex with 4-((3R, 4R)-4-3-methyl-5-(5-methylpyridin-3-yl)-2-oxo-1,2-dihydroquinolin-8- yl-aminopiperidin-3-yloxymethyl)-1-thiane-1,1-dione | 5a83 | 64.75 |
| 20 | 5qw | Crystal structure of the bromodomain of human ATAD2 in complex with Compound 49 | 5epb | 64.69 |
| 21 | bq8 | The ATAD2 bromodomain in complex with compound UZH-DU32 | 6epw | 64.54 |
| 22 | 38s | Structure of the bromodomain of human ATPase family AAA domain-containing protein 2 (ATAD2) in complex with 3'-deoxy thymidine | 4qsx | 64.01 |
| 23 | g6z | The ATAD2 bromodomain in complex with compound 14 | 6hib | 62.87 |
| 24 | 6xc | Crystal structure of human ATAD2 bromodomain in complex with 3-methyl- 8-piperidin-4-ylamino-1,2-dihydro-1,7-naphthyridin-2-one hydrochloride | 5a5q | 62.86 |
| 25 | np8 | Crystal structure of human ATAD2 bromodomain in complex with 5-5- methoxypyridin-3-yl-3-methyl-8-piperidin-4-ylamino-1,2-dihydro-1,7- naphthyridin-2-one | 5a5r | 62.81 |
| 26 | g7q | The ATAD2 bromodomain in complex with compound 17 | 6hie | 62.78 |
| 27 | bqk | The ATAD2 bromodomain in complex with compound UZH-DQ41 | 6eps | 62.58 |
| 28 | jtf | Crystal structure of human ATAD2 bromodomain in complex with 8-2-(dimethylamino)ethylamino-3-methyl-1,2-dihydroquinolin-2-one | 5a5p | 62.36 |
| 29 | kvz | Crystal structure of human ATAD2 bromodomain in complex with N-(4-chloro-3-(N,N-dimethylsulfamoyl)phenyl)-2-(2,5-dioxo-3',4'-dihydro-2'H-spiro[imidazolidine-4,1'-naphthalen]-1-yl)acetamide | 6s56 | 62.33 |
| 30 | g6b | The ATAD2 bromodomain in complex with compound 10 | 6hi7 | 61.7 |
| 31 | fzh | Crystal structure of human ATAD2 bromodomain in complex with 8-(((1R,2R,3R,5S)-2-(2-(1,1-dioxidotetrahydro-2H-thiopyran-4-yl)ethyl)-8-azabicyclo[3.2.1]octan-3-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)quinolin-2(1H)-one | 6hdo | 60.24 |
| 32 | g6e | The ATAD2 bromodomain in complex with compound 8 | 6hi5 | 57.04 |