| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 0d2 | MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin | 3uvc | 97.07 |
| 2 | y38 | Crystal structure of the catalytic domain of Human MMP12 in complex with a selective carboxylate based inhibitor. | 4h84 | 95.62 |
| 3 | e37 | Human MMP12 in complex with L-glutamate motif inhibitor | 4efs | 91.34 |
| 4 | 576 | MMP12 complex with a beta hydroxy carboxylic acid | 2woa | 90 |
| 5 | z79 | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor paramethoxy-sulfonyl-glycine hydroxamate | 3lk8 | 87.26 |
| 6 | cgs | Does a Fast Nuclear Magnetic Resonance Spectroscopy- and X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information of Ligand-Protein Complexes? A Case Study of Metalloproteinases. | 2w0d | 84.5 |
| 7 | cp8 | Crystal Structure of MMP-12 complexed to 2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl-4-(4-ethoxy[1,1-biphenyl]-4-yl)-4-oxobutanoic acid | 1utt | 81.81 |
| 8 | deo | Crystal structure of MMP-12 complexed to 2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl-4-(4-ethoxy[1,1-biphenyl]-4-yl)-4-oxobutanoic acid | 1ros | 81.17 |
| 9 | b9z | Crystal structure of MMP12 in complex with inhibitor BE4. | 6ela | 79.82 |
| 10 | lpw | Crystal structure of MMP12 in complex with hydroxamate inhibitor LP168. | 6enm | 79.61 |
| 11 | jt5 | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor N-hydroxy-2-(N-hydroxyethyl)biphenyl-4-ylsulfonamido)acetamide | 3n2v | 79.07 |
| 12 | nhk | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor N-Hydroxy-2-(N-(2-hydroxyethyl)4-methoxyphenylsulfonamido)acetamide | 3nx7 | 78.7 |
| 13 | 10b | Crystal structure of the catalytic domain of Human MMP12 in complex with a broad spectrum hydroxamate inhibitor | 4h76 | 77.7 |
| 14 | hs5 | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor 4-fluoro-N-(2-hydroxyethyl)-N-(2-nitroso-2-oxoethyl)benzenesulfonamide | 3f18 | 77 |
| 15 | b9n | Crystal structure of MMP12 in complex with inhibitor BE7. | 6ekn | 76.66 |
| 16 | ngh | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor NNGH at 1.3 A resolution | 1rmz | 76.11 |
| 17 | ngh | Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor NNGH | 5lab | 76.02 |
| 18 | cgs | Crystal Structure Analysis of human Macrophage Elastase MMP-12 | 1jiz | 66.42 |