| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | in7 | X-RAY STRUCTURE OF HUMAN STROMELYSIN CATALYTIC DOMAIN COMPLEXED WITH NON-PEPTIDE INHIBITORS: IMPLICATIONS FOR INHIBITOR SELECTIVITY | 1b8y | 88.3 |
| 2 | spc | CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A MODIFIED PROLINE SCAFFOLD BASED INHIBITOR. | 1d7x | 87.97 |
| 3 | hqq | X-ray Structure of a Novel Matrix Metalloproteinase Inhibitor Complexed to Stromelysin | 1g4k | 87.21 |
| 4 | z79 | catalytic domain of stromelysin-1 in complex with N-Hydroxy-2-(4-methylphenylsulfonamido)acetamide | 3oho | 85.51 |
| 5 | mm3 | CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A THIAZEPINE BASED INHIBITOR. | 1d5j | 76.72 |
| 6 | ohl | catalytic domain of stromelysin-1 in complex with N-Hydroxy-2-(4-methoxy-N-(pyridine-3-ylmethyl)phenylsulfonamido)acetamide | 3ohl | 73.32 |
| 7 | n25 | DISCOVERY OF POTENT, ACHIRAL MATRIX METALLOPROTEINASE INHIBITORS | 1bqo | 71.95 |
| 8 | s80 | DESIGN AND SYNTHESIS OF CONFORMATIONALLY-CONSTRAINED MMP INHIBITORS | 1biw | 65.69 |
| 9 | in9 | CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THIADIAZOLE INHIBITOR PNU-142372 | 1usn | 61.35 |