| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 5v1 | Crystal Structure of human JMJD2A complexed with KDOOA011340 | 5f5i | 94.04 |
| 2 | 5yq | inhibitors of JumonjiC domain-containing histone demethylases | 5anq | 87.49 |
| 3 | mmk | Crystal structure of human JMJD2A in complex with compound KDOAM20A | 5fpv | 86.96 |
| 4 | 7wh | Crystal structure of human JMJD2A in complex with compound 42 | 5a7o | 85.13 |
| 5 | kch | Crystal structure of human JMJD2A in complex with compound 30 | 5a7q | 84.15 |
| 6 | fo2 | Crystal structure of human KDM4A in complex with compound 34a | 6h4q | 83.77 |
| 7 | vao | Crystal structure of human JMJD2A in complex with compound 43 | 5a7n | 83.17 |
| 8 | fqb | Crystal structure of human KDM4A in complex with compound 17f | 6h4r | 82.74 |
| 9 | s2x | Crystal structure of human JMJD2A in complex with compound 44 | 5a7s | 82.72 |
| 10 | fo8 | Crystal structure of human KDM4A in complex with compound 17e | 6h4y | 82.1 |
| 11 | 5uj | Crystal structure of human KDM4A in complex with compound 54j | 5f3i | 80.75 |
| 12 | fqh | Crystal structure of human KDM4A in complex with compound 18a | 6h4o | 80.22 |
| 13 | 5uo | Crystal structure of human KDM4A in complex with compound 54a | 5f3e | 79.25 |
| 14 | 35m | Crystal structure of human JMJD2A in complex with compound 35 | 5a7w | 78.5 |
| 15 | 5u8 | Crystal structure of human KDM4A in complex with compound 52d | 5f3c | 77.86 |
| 16 | fqe | Crystal structure of human KDM4A in complex with compound 16m | 6h4s | 76.97 |
| 17 | kc6 | Crystal structure of JMJD2A complexed with bipyridyl inhibitor | 3pdq | 76.39 |
| 18 | 6z1 | Crystal structure of human JMJD2A in complex with compound 36 | 5a7p | 76.13 |
| 19 | 9dj | Crystal Structure of KDM4 with the Small Molecule Inhibitor QC6352 | 5vgi | 75.46 |
| 20 | 9cj | Crystal structure of human JMJD2A in complex with compound 40 | 5a80 | 75.22 |
| 21 | fqq | Crystal structure of human KDM4A in complex with compound 19d | 6h4w | 74.98 |
| 22 | fow | Crystal structure of human KDM4A in complex with compound 19a | 6h4t | 74.51 |
| 23 | 5ul | Crystal structure of human KDM4A in complex with compound 53a | 5f3g | 69.52 |