| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | a9v | Crystal structure of RPE65 in complex with MB-002 | 4zhk | 98.89 |
| 2 | 8d7 | Crystal structure of RPE65 in complex with MB-004 and palmitate | 5ul5 | 97.84 |
| 3 | a6v | Crystal structure of RPE65 in complex with MB-001 and palmitate | 4rse | 96.8 |
| 4 | 8e4 | Crystal structure of RPE65 in complex with MB-008 and palmitate | 5ulg | 96.52 |
| 5 | a3v | Crystal structure of RPE65 in complex with emixustat and palmitate | 4rsc | 96.35 |
| 6 | a8v | Crystal structure of RPE65 in complex with MB-002 | 4zhk | 96.32 |
| 7 | a3v | Crystal structure of RPE65 in complex with R-emixustat and palmitate | 4ryy | 96.26 |
| 8 | a5v | Crystal structure of RPE65 in complex with S-emixustat and palmitate | 4ryz | 95.67 |
| 9 | a3v | Crystal structure of RPE65 in complex with emixustat and palmitate, P6522 crystal form | 4ryx | 92.02 |