| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 1qa | Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2) with (S)-{2-[2-(5-Cyano-3-hydroxy-pyridin-2-yl)-thiazol-4-yl]-acetylamino}-phenyl-acetic acid | 4kbz | 90.35 |
| 2 | fnt | HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Fe(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]alanine | 4bqy | 89.16 |
| 3 | un9 | S-nitrosylated PHD2 (NO exposed) in complex with Fe(II) and UN9 | 2y34 | 88.92 |
| 4 | un9 | Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor | 2hbu | 88.44 |
| 5 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) K293K/G294E variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216) | 5lbf | 88.42 |
| 6 | un9 | PHD2:Fe:UN9:partial HIF1-alpha substrate complex | 3hqu | 88.39 |
| 7 | un9 | Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor | 2hbt | 88.32 |
| 8 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) I280V/R281L/I292V variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216) | 5lbc | 88.31 |
| 9 | un9 | HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) | 4bqx | 88.18 |
| 10 | ku1 | Hypoxia-Inducible Factor (HIF) Prolyl Hydroxylase 2 (PHD2) in Complex with the Carboxamide Analog JNJ43058171 | 6nmq | 87.98 |
| 11 | un9 | S-nitrosylated PHD2 (GSNO soaked) in complex with Zn(II) and UN9 | 2y33 | 87.88 |
| 12 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) G294E variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/FG2216) | 5lbe | 87.6 |
| 13 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) R396T variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) | 5lbb | 87.42 |
| 14 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) R371H variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) | 5lb6 | 87.37 |
| 15 | un9 | HIF prolyl hydroxylase 2 (PHD2/EGLN1) P317R variant in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) | 5lat | 87.33 |
| 16 | un9 | HIF prolyl hydroxylase 2 (PHD2/ EGLN1) D315E VARIANT in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) | 4uwd | 86.06 |
| 17 | qnm | HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Mn(II) and 2-(4-hydroxy-2-oxo-1,2-dihydroquinoline-3-carboxamido)acetic acid | 4bqw | 85.96 |
| 18 | 4hg | Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2) | 2g1m | 83.77 |
| 19 | 42z | PHD2-R717 with 40787422 | 3oui | 83.4 |
| 20 | 4hg | Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2) | 2g19 | 82.67 |
| 21 | a1z | HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Vadadustat | 5ox6 | 76.76 |
| 22 | 4jr | Structure of Prolyl Hydroxylase Domain-containing Protein (PHD) with Inhibitors | 4jzr | 71.66 |