| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | 0br | Crystal structure of human menin in complex with MLL1 and LEDGF | 3u88 | 94.23 |
| 2 | 6e6 | Menin in complex with MI-352 | 5db0 | 89.37 |
| 3 | 5a0 | Menin in complex with MI-859 | 5dde | 87.39 |
| 4 | 58p | Menin in complex with MI-352 | 5db0 | 86.28 |
| 5 | eev | Menin in complex with MI-1481 | 6bxy | 83.91 |
| 6 | fnv | Menin in complex with MI-1482 | 6by8 | 81.65 |
| 7 | 59x | menin in complex with MI-836 | 5ddd | 78.61 |
| 8 | 59q | Menin in complex with MI-319 | 5ddb | 78.41 |
| 9 | 59m | Menin in complex with MI-333 | 5dda | 78.06 |
| 10 | 59v | Menin in complex with MI-2-3 | 5ddc | 78.06 |
| 11 | 2sf | Human menin with bound inhibitor MIV-6R | 4og8 | 77.96 |
| 12 | 0rt | Human menin with bound inhibitor MI-2-2 | 4gq4 | 77.77 |
| 13 | 58r | Menin in complex with MI-389 | 5db2 | 76.75 |
| 14 | 0ro | Human menin with bound inhibitor MI-2 | 4gq3 | 76.71 |
| 15 | 59k | Menin in complex with MI-326 | 5dd9 | 76.57 |
| 16 | 2s7 | Human menin with bound inhibitor MIV-5 | 4og5 | 76.46 |
| 17 | 2vk | Human menin with bound inhibitor MIV-3S | 4og4 | 75.92 |
| 18 | ee7 | Menin in complex with MI-853 | 6bxh | 75.71 |
| 19 | 3xw | Menin in complex with MI-503 | 4x5y | 74.89 |
| 20 | 3xy | menin in complex with MI-136 | 4x5z | 74.37 |
| 21 | 58q | Menin in complex with MI-574 | 5db3 | 73.24 |
| 22 | 58o | Menin in complex with MI-336 | 5db1 | 72.19 |
| 23 | 2s9 | Human menin with bound inhibitor MIV-4 | 4og6 | 70.57 |
| 24 | 2se | Human menin with bound inhibitor MIV-7 | 4og7 | 70.32 |
| 25 | 2s6 | Human menin with bound inhibitor MIV-3R | 4og3 | 69.88 |