| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | orb | Structural basis for agonism and antagonism for a set of chemically related progesterone receptor modulators | 3zra | 100 |
| 2 | or8 | PR X-Ray structures in agonist conformations reveal two different mechanisms for partial agonism in 11beta-substituted steroids | 4apu | 100 |
| 3 | or8 | Structural basis for agonism and antagonism for a set of chemically related progesterone receptor modulators | 3zr7 | 100 |
| 4 | or8 | Structural basis for agonism and antagonism for a set of chemically related progesterone receptor modulators | 3zrb | 100 |
| 5 | gkk | Progesterone Receptor bound to an Alkylpyrrolidine ligand. | 3hq5 | 99.91 |
| 6 | wow | Progesterone receptor bound to sulfonamide pyrrolidine partial agonist | 3kba | 99.9 |
| 7 | str | HORMONE-BOUND HUMAN PROGESTERONE RECEPTOR LIGAND-BINDING DOMAIN | 1a28 | 99.89 |
| 8 | mof | Progesterone Receptor Hormone Binding Domain with Bound Mometasone Furoate | 1sr7 | 99.87 |
| 9 | as0 | PR X-Ray structures in agonist conformations reveal two different mechanisms for partial agonism in 11beta-substituted steroids | 4a2j | 99.69 |
| 10 | r18 | Human Progesteron Receptor Ligand Binding Domain in complex with the ligand metribolone (R1881) | 1e3k | 99.56 |
| 11 | 486 | RU486 bound to the progesterone receptor in a destabilized agonistic conformation | 2w8y | 99.49 |
| 12 | nog | Crystal structure of the human progesterone receptor ligand-binding domain bound to levonorgestrel | 3d90 | 99.02 |
| 13 | ndr | Progesterone Receptor Ligand Binding Domain with bound Norethindrone | 1sqn | 98.82 |
| 14 | as0 | Progesterone Receptor with Bound Asoprisnil and a Peptide from the Co-Repressor NCoR | 2ovm | 93.7 |
| 15 | 2s0 | Progesterone receptor with bound ulipristal acetate and a peptide from the co-repressor SMRT | 4oar | 90.77 |