| Index | Ligand Name | Structure | PDB code | ligand desolvation |
| 1 | t3 | Crystal Structure of T3-Bound Thyroid Hormone Receptor | 3gws | 100 |
| 2 | pfa | CRYSTAL STRUCTURE OF HUMAN TR BETA LIGAND-BINDING DOMAIN COMPLEXED WITH A POTENT SUBTYPE-SELECTIVE THYROMIMETIC | 1n46 | 100 |
| 3 | b72 | Structure of TR-beta bound to selective thyromimetic GC-1 | 3imy | 99.91 |
| 4 | t3 | Thyroxine-Thyroid Hormone Receptor Interactions | 1xzx | 99.89 |
| 5 | oef | Human Thyroid hormone receptor beta ligand binding domain in complex with KB131084 | 2j4a | 99.85 |
| 6 | ih5 | Thyroid receptor beta1 in complex with a beta-selective ligand | 1nax | 99.85 |
| 7 | 442 | Crystal structure of the thyroid hormone receptor beta ligand binding domain in complex with a beta selective compound | 1r6g | 99.84 |
| 8 | 8ho | THRb mutation with a novel agonist | 6knv | 99.47 |
| 9 | 8ho | THRb mutation with a novel agonist | 6knw | 99.35 |
| 10 | 4hy | TR Receptor Mutations Conferring Hormone Resistance and Reduced Corepressor Release Exhibit Decreased Stability in the Nterminal LBD | 1nq1 | 99.21 |
| 11 | 8ho | A novel agonist of THRb | 6kkb | 99.02 |
| 12 | 4hy | Crystal Structure of TR-beta bound to the selective thyromimetic TRIAC | 3jzc | 98.93 |
| 13 | 8ho | THRb mutation with a novel agonist | 6kke | 98.86 |
| 14 | 4hy | Thyroid receptor beta in complex with inhibitor | 2pin | 98.77 |
| 15 | 4hy | TR Variant D355R | 3d57 | 98.66 |
| 16 | g24 | Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24 | 1q4x | 98.41 |
| 17 | 4hy | TR Receptor Mutations Conferring Hormone Resistance and Reduced Corepressor Release Exhibit Decreased Stability in the Nterminal LBD | 1nq0 | 98.27 |
| 18 | 4hy | Two RTH Mutants with Impaired Hormone Binding | 1nq2 | 97.59 |